PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G09560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 831aa    MW: 89471.1 Da    PI: 5.6138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G09560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11658706355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  OGLUM03G09560.1 658 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 706
                      58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500538.873189IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.901.2E-621100No hitNo description
PROSITE profilePS5018111.405338384IPR001810F-box domain
SuperFamilySSF813831.83E-13338393IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.5E-10341410No hitNo description
PfamPF129374.7E-6343385IPR001810F-box domain
SMARTSM002561.5E-5344384IPR001810F-box domain
CDDcd000833.08E-11653710No hitNo description
SuperFamilySSF474594.58E-17653721IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17655722IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796655705IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-9658706IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10661711IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MKLRLRSMDQ RGGAGAAAAE THRVQLPDTA TLSDVKAFLA TKLSAAQPVP AESVRLTLNR  60
SEELLTPDPS ATLPALGLAS GDLLYFTLSP LPSPSPPPQP QPQAQPLPRN PNPDVPSIAG  120
AAGPTKSPVE SGSSSSMPQA LCTNPGLPVA SDPHHPPPDV VMAEAFAAIK SKSSLVVGAT  180
KREMENVGGA DGTVICRLVV ALHAALLDAG FLYANPVGSC LQLPQNWASG SFVPVSMKYT  240
LPELVEALPA VEEGMVAVLN YSLMGNFMMV YGHVPGATSG VRRLCLELPE LAPLLYLDSD  300
EVSTAEEREI HELWRVLKDE MCLPLMISLC QLNNLSLPPC LMALPGDVKA KVLEFVPGVD  360
LARVQCTCKE LRDLAADDNL WKKKCEMEFN TQDTCGCMMC KCIYSDQRKD IVLADKYTRG  420
NYMQKPVTQP GSGGPEAILH PSDPAQFTHP VLQPQRSKYK NPIRCQHTSA CRWQDAPAAG  480
IHFDCIIPLP INPYQLPPSA GACCSTTQAS ASAKDGGNVL QIPKPLEMYS PPCSAAASSQ  540
GHCFAVGANQ LASLDLAMDF DEPILFPVHN ASLQEGIQFY NPTGDTQLSR NMSIDKCLKG  600
SKRKGSGEGS SSLHSQEETG EMPQRELSME HAGEKAGDAD ASREEYVHVR AKRGQATNSH  660
SLAERFRREK INERMKLLQD LVPGCNKITG KAMMLDEIIN YVQSLQRQVE FLSMKLSTIS  720
PELNSDLDLQ DILCSQDARS AFLGCSPQLS NAHPNLYRAA QQCLSPPGLY GSVCVPNPAD  780
VHLARAAHLA SFPQQRGLIW DEELRNIAPA GFASDAAGTS SLENSDSMKV E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351570.0AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Z4C80.0A0A0D9Z4C8_9ORYZ; Uncharacterized protein
STRINGORGLA03G0090200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-45bHLH family protein